Seven research programmes, each led by its main study, with the related studies, datasets and tools grouped underneath.
Who invents, funds and studies phage therapy, and where?
Patents, research grants and literature mapped together to show how phage therapy is moving from the lab to the clinic.
Twenty-five years of phage therapy research grants: who funds what, and where the money goes.
Code on GitHub ↗Themes, equity, funding and trends across bacteriophage research, mapped from the literature.
Code on GitHub ↗How do researchers build, use, evaluate and debate generative AI?
A large, screened corpus of generative-AI research, classified one facet at a time with LLM coding that is checked against hand-coded gold standards. Current work at CognosX.
How big is the preprint world, and how can we count it reliably?
Harvesters for Crossref, DataCite and OpenAlex, rules to identify preprint servers, and public explorers built on the resulting dataset.
An interactive app to explore statistics for every preprint server.
Code on GitHub ↗Explore Crossref preprint metadata interactively.
Code on GitHub ↗One toolkit to harvest preprint metadata from Crossref, DataCite and OpenAlex.
Code on GitHub ↗Collect Crossref posted-content records and label which server each preprint belongs to.
Code on GitHub ↗Harvest DataCite preprint metadata at scale, with resumable extraction.
Code on GitHub ↗Retrieve preprint-server records from the OpenAlex API.
Code on GitHub ↗Who gets to publish, share and lead research in Africa?
Continent-wide measures of open access, collaboration, leadership and gender in African research output.
Map Marburg virus research and the gender of its authors.
Code on GitHub ↗How well do research and surveillance data track outbreaks, from COVID-19 to malaria and ticks?
Studies of epidemic research output, case reporting, under-reporting and surveillance, across human, animal and environmental health.
What explains how many COVID-19 cases African countries reported.
Cross-country determinants of the low reported COVID-19 transmission and mortality in Africa.
Identify the drivers of malaria under-reporting in Cameroon.
Compare integrated surveillance approaches for RSV, influenza and COVID-19.
Map research on ticks, climate change and tick-borne disease, with an equity lens on African research.
Map institutions building AI capacity for One Health.
Which companies, inventors and technologies lead a field, and where is it heading?
Patent and publication intelligence for biotech teams and recruiters, delivered through CognosX as reports, dashboards and pipelines.
Publication, patent and funding intelligence for research teams and biotech recruiters.
Reusable science-of-science pipelines for biotech topics, from corpus to topics and dashboards.
Prepare publication and patent data for network maps in VOSviewer.
Code on GitHub ↗Which bacteria live in us, and how do they shape disease and treatment?
Culturomics and taxonogenomics of the human microbiota, from new respiratory species to the gut bacteria that affect cancer immunotherapy.
All 35 species I described →How gut bacteria shape immune responses to cancer immunotherapy.
Reusable code behind the studies, free on GitHub.
General-purpose tools for collecting, enriching, analysing and moving scholarly data.
Enrich lists of publications with OpenAlex, Crossref and Altmetric metadata, in the browser.
Code on GitHub ↗Fetch publication metadata for a person or topic from scholarly APIs.
Code on GitHub ↗Extract entities, key terms and topics from biomedical text.
Code on GitHub ↗Move research datasets into PostgreSQL reliably.
Code on GitHub ↗
